Scaffold JGI25129J35166_1000405

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1000405
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14260
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F018267	Metagenome	236	Y
F018286	Metagenome	236	Y
F053548	Metagenome	141	Y
F087780	Metagenome	110	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10004051	F005547	GAGG	MKVWVMQGSYEGELFSSVHLTQKGCALACISDILEFHGIEDDETALSVMHNSYAYTDEEKKRQEATEPIEWDQEKLKEMTSEQLWKIFSDWCEISWDRMADRGYNLDANSVEIQA*
JGI25129J35166_100040510	F101902	GGAGG	MKVGNLVKRRDDXVHHGIVVEMGPQETAIDHGVLTVAKVQWNDGDLTCEFIKMLEVLSESG*
JGI25129J35166_100040513	F053548	GGAG	VKDSGAPSIGDLVVALYDEERDISCVGLVTETKGIECKIQWSSESNPIGWWPRTSLKVVSPSTQPGKV*
JGI25129J35166_100040515	F018286	AGGA	MTILTTFILVGMIDSHDTYFATVELNTTPASNGGPATAVIPVSAFPCEIYEGKVFYVVKLADEQDAVIVCQKEPDESR*
JGI25129J35166_10004054	F018267	GAGG	VKVGDLISFKPKSFGDDDWSNPGIVLDSYEHDDRQLGGWKDLIWIVWIDGYRCMVNERNDDVVYLTTL*
JGI25129J35166_10004058	F087780	GAGG	MKLGDLVKVSFGPNEKXITGIFIEDDTYATGLDKDGWTVITRAYILWEGXXXSTPLDQLEILNECR*