Scaffold JGI25129J35166_1000348

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1000348
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15259
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009892	Metagenome / Metatranscriptome	311	Y
F044541	Metagenome	154	N
F085558	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_100034813	F044541	AGG	MTANFLLDRFVRKGLTLMKKVQHDRDKSNSIPIEIYKNRCLGYIERVNELKHCNQDDIKYAKKRLFNVYFYLQSISGPERQNPSNNEIPIEIMQVALDQAVTDVYRRSGGLGYSVVRGLTLCEKKGEPINHYFRKVKKSPVISRINRHIEEDKIMIKQTMQEWRDDMAKQKKEVLDENKLSRLRQQKGNPVKSLSSV*
JGI25129J35166_10003482	F009892	AGGAG	MYKNPHPAQIRTTKVNPYDGMTRNGFLILLEENGITLDESRMAEVNHYFNLWGDTLRQDRKSGQPHDFAAFITWMKKA*
JGI25129J35166_100034835	F085558	GGA	MKNLLLALVLIVTPVXAIEPPDDVQPRVVQIQLYCVPTMSRMAEIISDTWGESGVAVMEMSATTTIAIFTNEDHTSTSVVVSRTEKNETEHCLAWSGASPDGFGFVVNPAPIFPEKKPDGTET*