Scaffold JGI25132J35274_1078104

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1078104
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 687
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10781041	F069451	N/A	RKSAITAYSTLWFIDLADNKAPLLLMEQLNRRHWKVMKPDGNTFFVEEENLTKRMW*
JGI25132J35274_10781042	F021674	GAGG	MERETYNSRLKSNPEDIPVGSLLRVKKHCRKNNIIKENGEFAILVERDGGKYISHDVLYPTGRRTVFIPINWEVVSYANQR*
JGI25132J35274_10781043	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLTKAYHEIRGTETRGNHYVKMQMISTGERIEESLTNANNCWDIVXEP*