Scaffold JGI25132J35274_1048109

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1048109
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 927
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F051564	Metagenome	144	Y
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10481092	F051564	AGTAG	MIREWCETYDEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDNE*
JGI25132J35274_10481093	F003976	AGGAGG	MSRVYNDYYFEKQDILDTLEKLDMSVRFLNAWIREPLGLENAKYVLEKNANQEFKWFSRDMVKELLEEEAQ*
JGI25132J35274_10481094	F010318	AGGAGG	MNVDNDKPRYIECIYEAPITFDLKELGIDWDDVKDYWVKHGILYVDFKNGDTESYWDNTIGETDYKWAVKESILTESWDLVEGLN*
JGI25132J35274_10481095	F052274	GGAGG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSE