Scaffold JGI25132J35274_1023190

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1023190
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1451
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F053545	Metagenome	141	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10231901	F053545	N/A	GGKVTTHNGYVMLPIEQTRKNVEGGRESIVKWSGETLPEKGE*
JGI25132J35274_10231902	F083388	AGGA	MVGMLMQKRISNIEWVMTRCSPEFKEVWERKLEQLINRRVEMAYERMVENARSVH*
JGI25132J35274_10231904	F000720	GAGG	MTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPEKKQRELSTDPYAMKE*