Scaffold JGI25132J35274_1020761

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1020761
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1549
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012584	Metagenome	279	Y
F018189	Metagenome	236	Y
F057382	Metagenome	136	N
F073646	Metagenome	120	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10207612	F012584	N/A	MKLKPYLPENTFYLNEDTLPQEHHTDRFGKIMVFRKDVGWTVIPLTDALQYLAMKHTHWTFTPDTPHD*
JGI25132J35274_10207613	F099447	GGAGG	MPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQEAFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR*
JGI25132J35274_10207614	F073646	GGAG	MLQSEYLDLAIELYSIYSEHKIHHKRWLTARELEKLKGGPGFLAKIKKMKGKMSELQPVFNDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSRRETSKEVTI*
JGI25132J35274_10207615	F057382	AGGAGG	MSKNDLTKAELRQLIDTIVFFQLGARTKELKTIKTKLKNQLKEMESNASI*
JGI25132J35274_10207616	F018189	AGGAG	MELSKEQMEKVIYELECNYNSKIFDDENLIIIINLFKDYLNKGETKGSINKEVHE*