Scaffold JGI25132J35274_1013905

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1013905
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1962
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058518	Metagenome	135	Y
F089518	Metagenome	109	N
F090997	Metagenome	108	Y
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10139051	F089518	N/A	LVEYVIHISKKGGECFAYHSTKDKSELDRLVGKYLRMKGITIEVKKRFLT*
JGI25132J35274_10139052	F096197	AGG	MTNFTKEQLKTLSAEINSLLLTHDFEETCDLNIKTLVDSCTYSGGEATFKVKVLLDGAETKEEKDLKKMAILARLDTSKIHEYTDHRSVRYRMQLVGYKTKARKMPWIVKDLLSMSGNEYKLTDAQARQWFEYEVQS*
JGI25132J35274_10139053	F058518	GAGG	MRXKDITXXADDLECDETDTIYKAIKNHILDVGIATPKTLTGFNWXLDVRMRMDNYDT*
JGI25132J35274_10139057	F090997	AGAAGG	MRIRVKAEETVYLEYFVDVPEEIVEQSKERISKTYLKNAIHNWIEENQSEFDYQDYDSDRSWYDWEEVGEEWNN*