Scaffold JGI25132J35274_1011859

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1011859
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2137
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004404	Metagenome / Metatranscriptome	439	Y
F040331	Metagenome	162	N
F047109	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10118592	F040331	AGG	MTNQELKKKVISSMKKDDDLKKYVEDMKNLSTEQFDILXKIIDKAYXDKVFSDRK*
JGI25132J35274_10118597	F047109	GAGG	MKTYKVIGGYTVYEQYEINVKAKDNKDAXKKAEKIPVEKWSELQNSNENXFIIDDVWEDQ
JGI25132J35274_10118598	F004404	GGAGG	MSXDSSYNKLNKTXKNFNDYLAKIKXEVDLNEHSLAIHYDYDIVPLPDDIIDEANRKETNE*