Scaffold JGI25132J35274_1010318

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1010318
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2296
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F105877	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10103182	F105877	GAGG	MSNHENEMLKEQLFDEWLEHLELFVGWPKGDPETYKEAARRTEEEWERMN*
JGI25132J35274_10103184	F029404	GGAGG	MTTVDFVEIELGGDKWKITWDTRTRKKIKTRGEKAGLMYTIYSLTELTPAQAYDIAMTQLEWLKKDQVYVI*
JGI25132J35274_10103189	F040869	GAGG	MEMKVFDXVYXELTLXQQEDKDDLEIAEQSLMAAMVFTMTNAPSVLNGLCLISNTFNGILSEYTLKDIQLRGE*