Scaffold JGI25132J35274_1005531

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1005531
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3188
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10055311	F020533	AGGA	MQDAIMLDQEELVAEFERKVRDKKVFFEVINPGQPESKGVDIQAMLEENNKLKLDLEIFKDIVQKSITSDARRGFNGQDLG*
JGI25132J35274_10055313	F031662	AGGAG	MDFKIEKNIPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKENGTMYRIWRIA*
JGI25132J35274_10055314	F044429	AGGAG	MSELPPKEDRMPGCEWVLVIKYGDPHTNIPQTTGFGPFPTKEDADSFRAQYYYDQIVIAEIVPLNAVLPKSATELDIDFIPEGKVVNIRSKINPNQH*
JGI25132J35274_10055318	F057324	AGG	MNIKNKNIINDDLVKDWLDKFDGNCEISLLSEIANNNICVSGMVDSILAYHVGEVEIAEDFYKRMWRSQS*