Scaffold JGI25132J35274_1005384

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1005384
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3232
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F031249	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_100538411	F004771	GGGGG	MRKRPRVGDLVKMRTHETGLVGIVLERHPKAISTTPAQLGIMWAGGSGKMDWEPEAWLEVVSSV*
JGI25132J35274_10053848	F031249	AGGAG	MPKAGDLVRVRTKHHGEXLGVVVKVEKEGIRVKPQAHPNDILAAESDVKVLVSV*