Scaffold JGI25132J35274_1001900

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1001900
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5537
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009762	Metagenome / Metatranscriptome	313	Y
F037431	Metagenome / Metatranscriptome	168	Y
F067686	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10019002	F037431	GAG	MKYKTDRPFSQEELKQMDVIHDPNTSLFVDQNDESYVVKDFINDDECDALATFFNKNFDRIGLNINDHVLHITYPMAIKDINDIVRPKIYEHFGDDVIFYSDVATEDPMSVGDQFFKSVRPYGLHTDSVTHLNGYRPYKDIIIPIELDKIDETHYVTFNQRYRGRATHFMKGRDIGSFANYANVIRHQSYQGYGVENLDHNQKDMSILEKIMPAHIPMSIYEGLSIEKIFKWKPKDAIIHDASVLHAPTDFKAQGADHKIGLTLHLMKKDATYNNRLEGYYTPFSRYTKPLIKA*
JGI25132J35274_10019004	F067686	GAGG	MPSNITHYELPEFLSEKTKKELLDIGMNLKDEDWTVHHSTKTGKPSVLNFYDLKKTFHGRNCYLVMIRPNAVQDWHTDGGKRNTALIYPLTDEYAPCKFQPGETTAPMFLNTQAKHAVFNNNKKRINLNISFEDDIEDCIKFFKEIDKYEFDPS*
JGI25132J35274_10019006	F009762	AGGA	MTRHIQKKWHGKFFIETDYKVPIDFWDTYFNGKWXDSNQLYSEYVNDATGGKAMNKFYVQEIHNYDRKLLRLIKNLWNVFGIRPREFRCNFFRVLEGGELPIHVDNKSKCSFVIPITENTGELYFDDGTNNASILYDSMVVLNTKKPHGVRSPSKERIVFHMGVHDVGFENLS*