Scaffold JGI25132J35274_1001640

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1001640
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5961
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F057678	Metagenome / Metatranscriptome	136	N
F089408	Metagenome / Metatranscriptome	109	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_100164012	F057678	N/A	MVEYEVNDKVVFRFNNVNEIAVVTNVRRHKNTVTGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRQNFSRDIPLYLDGEAGGGVQHFERHNDLIFPTQGPRSF*
JGI25132J35274_100164015	F105900	N/A	MGRVNNAYAYDKKRAKRMGKLYSTIDFNVNDKISAELFAKVPEKPIVGELEIGGKSFKVTYQEIDAMLSTLQEAKRTVESKYRLGLMNK*
JGI25132J35274_10016403	F089408	N/A	MLRRKYQQEKTDLIQDVVSKGRLTAVLSIKLQGVSKIADHYIYEVRFLDNGIEKNIPIIAFDVTQALAKLEPHLNIGIPSATLKWMLGNERNVKGSNINL*
JGI25132J35274_10016408	F005364	GGA	MKKSDLKNKLKSIVKEEVSSLLAERDYKYGGLLDPTNFDPVDPEVHIIGFGSMTRSALRQEIVRRLQGALNTAKDAATGGSNSYDKFKSLEGVLEPNGVLQQQLKAEREISQQMEELRSQGGRRAIPIPKQK*