Scaffold JGI25132J35274_1001520

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1001520
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6142
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014805	Metagenome / Metatranscriptome	260	Y
F021015	Metagenome / Metatranscriptome	221	N
F061923	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_100152011	F061923	N/A	MRPETKXILGKQGAEIASVRGTLQGLAEAWGADAKYLQTRIADVEEKLTKIQNTLHEIEWSEEXDWXGKLNE*
JGI25132J35274_100152014	F021015	N/A	MGLNLNYTKPDGQAANYWKISRVEDWFEGTDPESSQYKANVNSLGFTNETYRNAGAPSVANNMFTCNYASGTDFYPYYDLTGVSGTVTGSQRAVPLPDGWDPLQNGVSGWMQRSDDIRSGAYTWLKVCVPFFSGATDALTEGE*
JGI25132J35274_100152015	F014805	AGGAG	MGLYKEITTDAGSTLSYWDYGIVEVNTSASKAEDQSANVNIWGYHNVEYYNNDAPPIERWNSYSCGMVSGTDHYPYMDLTGVSGEVTGTKRLGPDLPDGWSWTENSVSGWMANSSDIRNGAQAWALVCIPAFSGAVVTGQVYPD*