Scaffold JGI25132J35274

Basic Information
Taxon OID	3300002483 Open in IMG/M
Scaffold ID	JGI25132J35274_1001255 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002483 Open in IMG/M

Scaffold ID

JGI25132J35274_1001255 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6745
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6745

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10012551	F010211	N/A	MAGSVRYNAPCASERMPQKSNWSDLLVNVVGHDPPADSLELRNSFIENCLADQDGNKVSQADIHLTMQKGIYDWEQEALSKNARLNGLIRAPYNTGKSQQVPIGLSAYMTTRKHELETLIVSADGGISTKRILSLRALFMSDMYRYWCREHNFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK*
JGI25132J35274_10012553	F060872	N/A	MREPDKTWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTKKAYKHFDGYNHYPDGNLTATDYDDGYPVWLCADFNRSPHCWALLQVKKARNGLRQYVVFDEIFSKEALTTEQALKAVELLKKWGISRVLLSGDNTSNQKSGNYGRVGKNDWDYVREVFDEHQISYKNELDIQNPRRKVRVDKVNNVIYAGINGERRLLINTRCDHVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGSNAPMYVLR*
JGI25132J35274_10012557	F088821	GGA	MIDSSKLYSVPKDVVEDIVMKESRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIAQSTIESNDEYKERLARMKLFPLEQKFFSAQQRIYDENNVNRSYPQNKDFWMYKESNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGEGNPVTDKDGNVVPYNFVVRPHEIWNFEVKQGILTLLVTRQMYYDIYNVKKHKWTAYTPEYICVYTEENGIKKKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYSLKGMYLAASELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDEQQIPNNMLYQADMQGLQHLRDVIFGDLMSLIFLMAQVRDKSIVKSNVSGSSKRFDNVDEQGLLASTAMDMEMVEMQVLKRMAKVRDEDPTDYHVTYSKHYDLSSAAEIFSDITEGMQYHVLPLPLLKKLTGEYMRKRSMPQEDIQLVMDHFDEFGIPRTSGDLKNLIDILPQEELQRQAELGIDLNSEQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25132J35274_1001255

Overview

Ecosystem & Geography

Associated Families

Sequences