Scaffold JGI25132J35274_1000548

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1000548
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10033
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000479	Metagenome / Metatranscriptome	1092	Y
F001689	Metagenome / Metatranscriptome	651	Y
F002859	Metagenome / Metatranscriptome	525	Y
F048277	Metagenome	148	N
F067200	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_100054815	F002859	N/A	MNLQNHIGISMLVIIRPDLYEYHALPMTDELFWRRVENLRRAALTAEDFEFRLLYYNQMVELMKRCP*
JGI25132J35274_100054819	F000479	AGGA	MSKAVNIIEVLEKAQQSPASVSKRNKQAIVDAYGRALTMQKVLADFIKVNRQLMIDLSMSENANLLHGKDYSLHVSQKLGAKIDXQLVKEKLGEIAYHQCKVPTQYKQIQAMPLSETTVSRNKKATIDEVADFRISA*
JGI25132J35274_10005483	F001689	N/A	MKLKKEYEMTFKEGLRLGIRLTQAKAYIQNARDAKRLGDDAMAELYMGFAKDWNDLARNAGRKFTPIAAHEPEQPAFDFGDVEMQEHLSKLPHQLKETG*
JGI25132J35274_10005486	F067200	AGAAG	MKTDTIMPKFKSYRPFKADWKYEKKCCKECDKEYLTDNMMGREEGKFIYVWYCLRCYNSLQKS*
JGI25132J35274_10005487	F048277	GGAGG	MFHFWHILAIVGVFVLGFILGRLSMKRKYEAKVEELENRKENIEWAARHH*