Scaffold JGI25127J35165_1025549

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1025549
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1387
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F011410	Metagenome	291	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10255492	F000720	AGGAG	MTLIKETKGVRKEIPSRMMCATFAIPIDGRKVTGTLDYTVSDTGVTPMAFWIKIKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNIIGHMANYLHKNMEDIILGKKPDKKQRMLSTDPYAMKE*
JGI25127J35165_10255493	F011410	GAGG	MKDFKIKLEWYTSNTLTWIVFLVAAGLMIVNIVTMINMYSVIETMWHEIVQVKETNSYLYQFIEEHRNDFN*
JGI25127J35165_10255494	F023621	GAG	VDENRRNHMTLLNKRIDNVLKVMREAKDYECKMIWNKHLQKLFEIRKRKAYERLQDQARMVH*