Scaffold JGI25127J35165_1015689

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1015689
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1883
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F024810	Metagenome / Metatranscriptome	204	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10156891	F024810	N/A	MVVDPDILPDNTAFILDLAYIQPVFTNIPGFGTVFVRDLDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS*
JGI25127J35165_10156892	F003693	GAGG	MISKQALIDISADASNSLGVQTDGMLLCGVQFPASMTGTAITFDFSMDNSSFIDVKETDGTDVSYTVSAGDVVRVDPSGWAFASNGYLRVTSNGTEAADRKIILHFRHS*
JGI25127J35165_10156893	F092017	AGGAG	MGMLLMLKEGRNLNIESIPDQPLEPSFPIVDPNDNANDGWFGLGAFGQAIFASELVEEGAA*