Scaffold JGI25127J35165_1012193

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1012193
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2174
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F005533	Metagenome / Metatranscriptome	397	Y
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10121931	F034958	N/A	RTTTMKSEVDQIIDNLEFCIETLGLNDEQTGDVLAATNEIGVNVEYFANEFMETSSKRVHENDYLNIAMFNAMFWEW*
JGI25127J35165_10121932	F001479	GGAG	MSKEMLFLCDVLTDWCKKNKXPHRCASDLLYSDDTKGRLTGNQVYWLENFISTWDIINQTT*
JGI25127J35165_10121937	F005533	AGG	MDYTHNETALLTLISNINNQFYYIGEEDDKVAPIDVKKFTQYCVDFIDSLEIEK*