Scaffold JGI25127J35165_1010924

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1010924
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10109244	F037769	AGGA	MSYIQTEGDKSDEKLLRRLLTEKMSEKDANKIISHVFSDLIKWTYDDAVFHLTQIFNFTNKECDQLFTEYNILSSSTTGINMNPEPNFNATAPNDVKDYSANLWQARKHLSDAKKLISATALTPSDYDNQEDFQDAVVQRMYLQDHFMQINKYIDEHLDFAKLYVPPVKP*
JGI25127J35165_10109245	F012584	N/A	MKLKPKPYLPEDVYILSDEELPKEIHTDRFGKVMVFRKDIGWTVIPLKEVYTYFKHMKHTHWTFTPDTPYE*
JGI25127J35165_10109246	F016820	N/A	MNKKEFLYLVFSNSANNVQEIHGVYKDLKGASYGAMSALSTLFPKHGDEAKIIRCEIISTEEAQIEYEKANPKDIFEKCEDDYCPMPTLNPQEVS*
JGI25127J35165_10109248	F006793	N/A	MTNQRSTNEEKEQRINYAADELAKGKRAMDISKKLSTRYNISIQQARDYVRQAKPVLTESISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSAYDQHLFKNFSEIKKKMKHSDLDSLDDSLPEGEIPF*