Scaffold JGI25127J35165_1007059

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1007059
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2919
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007537	Metagenome / Metatranscriptome	349	Y
F025171	Metagenome	203	Y
F103092	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10070592	F007537	N/A	MKKLLLALGAVVSLTSCTKDEFELDTPPPSNYQFEMSGRATQDINGYYHVSIDPTSTQQTLHRFGAYITNVDKWGLPAQVIWRCDAFWYTPDTLGHTYIEIGNVPTGESPWSWENFAITGYEGMTVPIVNGTSFADPQMDSVFCMMAPVGAMVGDTVTIYGKAWFEEGDITIEDNIKVIFN*
JGI25127J35165_10070594	F103092	N/A	MANMNNQGKRSDQYSNSAKFAWYGVVGMITLLVLLTLLGGCSTTKKVDECCKSQKTSTK*
JGI25127J35165_10070598	F025171	N/A	KNNTYKYSAGENGNLGCIVGAEFGIHECNVSYIGRTKVQGYTFVLGKKVNVELNLKTLKFVK*