Scaffold JGI25127J35165_1005859

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1005859
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3232
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023877	Metagenome / Metatranscriptome	208	Y
F025520	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10058595	F025520	N/A	MTFDDDFYIIRSTSYIKSVPTKLDKDFKKDLIDDNGDLKPHVEKIIENVFYYGKQCINATLPTCFIEIEYKTSNGHYLITREVFLYEEDYPTYADLVAYKEKLAYGFASQVTQETKDIVEAFHNGYGCECLSSGDY*
JGI25127J35165_10058596	F023877	GGAG	MTLKQLIKEYVDDHFKHFGFYPYEVEVDGQVYSYGTYWEILEDERFN*