Scaffold JGI25127J35165_1005355

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1005355
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3394
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10053555	F021207	GAGG	MSKRFKQVNVQHFATLVQEIDVSKYTQKEYVEIVEELYMSIFRHNTSGDFVVETLPNEEGNWKVHKPSATKEEVMELIKQGKVVWDKNVI*
JGI25127J35165_10053556	F105326	AGG	MGQERNLTPTQHWELHQGLWYMLGCDMKLKHKDRTKIIYVDNKSKRQYTYSALGFIKEKKYANKKY*
JGI25127J35165_10053557	F013187	N/A	MPTKNIKKKPKKNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQGG*
JGI25127J35165_10053559	F008925	AGGAG	MTTKSKPKIDAVTLNLVNKLKAIDDTINEGAWEYIHLGDILRLQDAFHTAINHFDLKKKGGIGEYGADEGKYTQFYHSDYVCHTDPEAFDPSKVEEKDDE*