Scaffold JGI25127J35165_1004452

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1004452
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3735
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014803	Metagenome	260	Y
F021440	Metagenome / Metatranscriptome	219	Y
F026151	Metagenome	199	Y
F033949	Metagenome	176	Y
F076589	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100445210	F033949	AGGAG	MNTKVKWHSEDYDLGCDVSKLEKLGFKNSSWKDDIAPSYSNDKLQIFFLNKNKFDEHKGRSKFSVNKILDDETIETIYETDYFYKVLQLAEEGK*
JGI25127J35165_100445211	F014803	N/A	MNKEQKEINKRVNRAFCKLHILSNITWTPYRDELFNMNRKEEKQHRFGDWAEHHKGSASINDCAKLFTVKHIAESLLNPNKWDVKDLLTIKKSCIYSQSLVNNYGDRIKKAWIDEDIKYLADLDYIALVNWDLYQKDKKEVA*
JGI25127J35165_10044524	F026151	N/A	MALEKKNLPTKDNVKRLMEQTLKNILSCVGGVYYNKYKLKLERKKKNEKRTLGS*
JGI25127J35165_10044527	F021440	AGGA	MAKNKPTHFAVEDIKFYAMDEDNEIITNEKGEEVIYRLKEGVRFKPLEYLCENMDTEIMEEVK*
JGI25127J35165_10044528	F076589	N/A	MDKSIKIENANNEKMYLCSWNDGDTVEVHTEKTLRKEYQGTNLFDKEEGKLINDAMFNWCTLIPTKAYDKARSLDEVFKKFNDEKNYSFVGYTWRLDNCTIERIK*