Scaffold JGI25127J35165_1002695

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1002695
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4869
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F077194	Metagenome / Metatranscriptome	117	Y
F078600	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100269510	F077194	N/A	MQTLTILDFGSGEVHQYHDINYEKYEMELDEFVSVQLGYNLNEVEYMFHTDKTIYNLTNEL*
JGI25127J35165_100269512	F050305	N/A	MNNLNTTIDKVAMSEFGMHYYQLGDNEKQWCHDEMVNNPKWLKKDWEDPLWCMADKWEAGLPIYEEIIITYE*
JGI25127J35165_100269513	F078600	N/A	MYNVNNPSNWSWSKAFAEMEKTVHQAEITSQIINHLAGYPGDSHGEYMKLSKEDKDNVYEILAQIL*
JGI25127J35165_10026956	F009959	N/A	MTEQEVIDKICDRIVTTLYNELDYYMFEELGYTETDDKYVEDAELLINKIINRLIK*