Scaffold JGI25127J35165_1002519

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1002519
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5056
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016324	Metagenome	248	Y
F031249	Metagenome	183	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100251913	F054844	GGCGG	MILETGTLVRGRGSFGIVLGVCKKRWAKDDDVWVMWHGDPVLKIASCRFLEVLNESR*
JGI25127J35165_100251914	F031249	GGAGG	MKVGDLVRVRTKHHGEKLGVIVEVDKELGVRIKAQSHPRDIWGLPQDVKVLVSV*
JGI25127J35165_10025192	F016324	GGCGG	MLHRLPPRLTPPKIGDLVRLSGPGGLGRAFKRLHGVGLVVNIVKPENRRIRYQVKWLKTDERMDFHEEDLIVVSNVD*