Scaffold JGI25127J35165_1002247

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1002247
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5382
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002928	Metagenome	520	Y
F006282	Metagenome / Metatranscriptome	377	Y
F036268	Metagenome	170	Y
F041492	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100224713	F002928	N/A	MKNYLVKFKCVSGEHEYTDYYIFNKKKSEWGYCKEFWGINKRDSNCLKDNMFWDDWMQNAISVYSETEITNQEADTLQRLGVA*
JGI25127J35165_100224714	F006282	GAGG	MKNNETLKNRLAELSKQNTLLADHLASMCCQADEDTPSKYRTEHFRSTMDDAYEYLEKINYFKRDK*
JGI25127J35165_100224715	F036268	AGAAGG	MKNNCQDCDGLGYFTDVISTGLSDPNDPYHEPHTERCDTCMIFDSDIEADNFLKQQASKQRG*
JGI25127J35165_10022478	F041492	N/A	MKARLLEKEDLLKMVEPHHLNEFKKWKVKDLRNHFNLTHKINGKYENKKGYCFKCLKPLRPDYTVFENYCLDC*