Scaffold JGI25127J35165_1001532

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1001532
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6566
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F062259	Metagenome	131	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100153213	F096197	AGAAGG	MTNFTKEQLKTLRNEINSLLVTHDFEETCDLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILHRLDTSKVHEYIDHRSVRYRMQLVGYKTKARKMPWIVKDCLSMSGNEYKLTDAQARQWFEYEVQP*
JGI25127J35165_100153215	F010471	AGGAG	MIQLTLATNNKAHPEYSDNQIAQALGLLPLWVAEHIGNDDDTDLVQFMEDRYGFGKLYKFEGTINKNGDYVSKDDTDLPYMGRMITKHGYAYFYEYAIVALPQPDGTHFITRMD*
JGI25127J35165_100153217	F021206	AGAAGG	MTTVTFNQLLEMENVLATRKIPSDISAMAKAKRYSESKQKVITLGDQPLHYVLRILAKEGLDK*
JGI25127J35165_100153219	F013377	AGAAGG	MKTKKILKHWALFYKHGERQFISAPTRKELDSAIFGGAYAPSPGNVTYYVEYERDIKDTQYNQVTEV*
JGI25127J35165_10015328	F062259	AGGAG	MKTERELDSEVREAFDRAIDAIMFDYTYIGTFERYRDKLEYMGFKHIETGDSIKIPKCGVAFMKKKETENA*