Scaffold JGI25127J35165_1000831

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1000831
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8984
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009993	Metagenome / Metatranscriptome	310	Y
F012718	Metagenome	278	Y
F013946	Metagenome	267	Y
F034713	Metagenome	174	Y
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100083110	F013946	N/A	MDTQTIIDSLLRGVMIAGVNRAVFERKPVFSMGTVNQGFRLGAASVGYDLVVRPTVQKVLPQLPLPNGR*
JGI25127J35165_10008312	F009993	N/A	MPRLIKYTTSGFVDNVPDQALAVIEHASLFYLVDQRFKGMNKYIAFAVAGAGYEIFIDNLKQQSAPEGFSASKK*
JGI25127J35165_10008315	F059991	N/A	MSNPQLIHRANENSSLFNTVKARNSKQNVFDYVNEGELNVCAYAKSRIIVNPTTSLNGDGGQTIKFELPNFGLLADMYLQTEFARGDTNADTGNKDCFLVDMAGAFTFSKIRVVYNGNTVFETTPEHLVASLYARANREQSLVLDGMLGSGIIGASDDTHGNLEGRKAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPILDVHGKAETTADRITYAGSNLICYLNELSPQELAAYQSRNYAPNSVSSQLGYTTTLLSESVASPVLATATTKGNTIKINSISGLVRRMYVFATIDSDRSSTSDKKYMNLVDISSVKLSANNQTIYEIQDCGIGIDNVNRSSGNGYQTDQFVEMYHNKLTGPCNSAVGSDTYKLMDIGVDKSVGKTTGDQFDFARVKVINFGMNPDDYSSADGSLALSQVNVPELEVKFPTGTSGAHTVHVVAELITLNTYNVSATGQINFKSISE*
JGI25127J35165_10008317	F074141	N/A	MSDDLIDFKDTHYAKKNKMLCIYCSYKSAVPSKNNQFCSEICRLLHLSVSKELNVEDIGKLIKLSKIDLIHIILNLKCQNISIEGLHKILDKPYEYKQKMLVKNQGSFKLDFS*
JGI25127J35165_10008318	F034713	N/A	MVLLTFSFTGENTTGQATFTTTKEYKFKNLYLEDVKYNIFNEKLENSIDKSTSGAGLGSVSTTITSPLGIHMDFLDQADCVLYSLGDGSGETLNTAQNINGLIPIGYAGKVGSQPVSTRNTMSHSYPYKLISNRPQTWASGKSLVFNLYFRDVMTDGIIKDWALMSGTTDAFSDINSISITLRLE*
JGI25127J35165_10008319	F012718	N/A	MSELLQFDLTDIPDNPSIVLAGRRRAGKGVLTKDLCYNFFRGKIKNVFLFSPTSEIAANGFDFVPYEFRYNEVEVDTIERIMKRQEYLIRNNPKGNHRILLIIDDIIATNDNKQQKILDKLFICARHYQISLIVCYQYIKKDFSPVQRDNVDIIFCFQQSNFDNKDALNKQYLSINDNKKDGLDLINKYAVGYQTLTILNTTNSDKFEDFCFFYEADIINKKFKLGQEYE*