Scaffold JGI25127J35165_1000755

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1000755
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9403
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F017285	Metagenome	241	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F026439	Metagenome	198	Y
F031249	Metagenome	183	Y
F037480	Metagenome	168	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100075510	F012507	N/A	MSVWTDKLSVGDLLYSVDGKPAIVLEKVESARAKYGDIANKRWRFRLHIDGEQGWLDEVRLRTQYTLP*
JGI25127J35165_100075514	F017285	AGGAG	MSWSGTVTCSYCYKQGHNRRKCPELTEAIERQYIGHTLNAKESREKGKINDAEWYESRAELKRQEYMKRTKIDLATGEKVSNKAAKAARMKKVQCGYCGKRGHTRRTCPAVKIDKQVFVEETRRMRIAALKTARQTGIGLGSMLPIRSPGYENGEWRRDILTLRYVKSIEWDSCHANRPALTVKHVDARKLGSPDQSRYTSKDQIEKLVQANDTALRYADAAGQDLPPSSLIPTLDPPKGWLQPTEQSLALVITHAFPTKGNKHATQRGYDYAYPSGMIKEIIKDLGLTEHFDHINWS*
JGI25127J35165_100075516	F037480	GGAGG	MQVGDLVTFPGAPVPATGIILRTQPDGIYRGDHIKRVKVYWIEDAEVSWEPIKWLELVNACR*
JGI25127J35165_100075517	F054844	GGAGG	MRLETGTLVSWRGSVGLVMGACKKRWAKDDDVWVKWTDEPKLKIESSRFLEVLNASR*
JGI25127J35165_100075525	F031249	AGGAG	MTKVGDLVRVSTKHNGDKLGVVVKIDKDGVHIKAQNHPRDILALHQDVKVLVSA*
JGI25127J35165_10007553	F026439	AGGAG	MASQLDSVILWSDAVEQFTEMILPMIEVSEQRLGHVDIPARSEAWSNYADQLHAEEVISDWQVENWEHPPCCD*
JGI25127J35165_10007555	F025414	N/A	MQVGSLVREVMDGNVGIIVAWESDGWLVNFPQFNMVFHMLPKLLEVVE*
JGI25127J35165_10007557	F008590	AGG	MKTGDLVTYWYQLSRWQKGLSVHVGLVIETGKFTGNRDVKVLWTNDPEPQTECTQHLALVDDISLTT*
JGI25127J35165_10007558	F019158	N/A	MKMTLVIDTNDREGINDALKMVRIMHEKYAGNVTYHKESFGKIEFIKLLRKFMRESVAHLKDEDDGQVKDVNDLSNLRNAKRFADRIFAGER*