Scaffold JGI25127J35165_1000577

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1000577
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10824
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F018286	Metagenome	236	Y
F041168	Metagenome	160	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100057713	F018286	N/A	MTMLTTFILVGMVDSFDPYFATVELNTTPASNGGPSIAVMPVSVFPCEIYEGKVFYVVKLHEDQDATIVCQKEVKDDTGRRKAD*
JGI25127J35165_100057721	F041168	AGG	MKQAKVRKHTVGFFRNDAEVPFINLEMFETIEQATGIPHYWRDRNGNVSQFWHSGIIPKGTGVVCQHRERGMKHTFWTVTDPESELIGKMFIIGHTFKDRQEDEFERFEYSNISPTLKYSILAEKPLTK*
JGI25127J35165_10005775	F005547	AGG	MMKVWVMQGSYEGEVFSSVHLTQKGCALACIADVLEFLGVDDNETALGVMNDVYSYTETDGEQTEAFEWDQEKMKSMTSKELWKIFSDWTEISWDRMSDRSYYIDAQPMEIQA*
JGI25127J35165_10005777	F059942	GGAG	LTTTELKVGDLISFKPIDFGLEDWSNPSIVMHEYEPPNEGLWSIWCDGVFCVIDDANYEILHLTVS*