Scaffold metazooDRAFT_1497035

Overview

Basic Information

• Taxon OID: 3300002471
• Scaffold ID: metazooDRAFT_1497035
• Source Dataset Name: Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1388
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM20-C133 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025724	Metagenome / Metatranscriptome	200	N
F056546	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_14970352	F025724	GGAG	MAKSKPSTTADKIVKNDMVDSKAGKNSTALTKKPEDKSEVAKRKRLISTEQVLDFISQGLSQTDALSLVGIAYSTWNGWMKSDPDLVADIKRAEISLKIKHLQNIQRHSESDVRASQWLLARKFPSEFGEKSTIDMNTKSDDSKVIINVIQQVQKEKHAQVIQVTHELPEEIDDEED*
metazooDRAFT_14970353	F056546	GAG	MKIKDRKSILNLYISTKLISLLDAFSDRHSIKVSKLAEKLMLDGLNKSEIDQVLSIDDDDAIEKITTKIIRELDHGEK*