NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1408322

Scaffold metazooDRAFT_1408322


Overview

Basic Information
Taxon OID3300002471 Open in IMG/M
Scaffold IDmetazooDRAFT_1408322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014846Metagenome / Metatranscriptome259Y
F077029Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_14083221F014846N/AMSVFLDPSGQPTYGIAICGRCSRKMLLSELAPDPNYPGLMVCEEDRDEYDPYRLAPRRPDQIVLPFNRPDTPINTHPAGVIQEAGDEFFITEDGNG
metazooDRAFT_14083222F077029N/AANLQQDVEVPQRWLNAIVDNLTAKVASETPQVDAQLIPMLEQRAAMSLQRAWDGDNDGSPIQINPGIGVYTK*

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