Scaffold JGI24702J35022_10075347

Overview

Basic Information

• Taxon OID: 3300002462
• Scaffold ID: JGI24702J35022_10075347
• Source Dataset Name: Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1823
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027231	Metagenome	195	Y
F057471	Metagenome	136	Y
F061011	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24702J35022_100753471	F061011	N/A	MTINCQRRGPKQDLPGRLSGDFRIHKLEKIVGGGEGKKKYPARQCKVCAAHKRSETRNICKFCIVPLLKGSCFEKYHSVTNY*
JGI24702J35022_100753472	F057471	AGG	MISTIHDATIVNKERKDRKTNMEIKKPYTIGQYNKFIKGIERADQYLSY*
JGI24702J35022_100753473	F027231	N/A	VRLAQALLDRNVRVYSTRRANRGIPCNLDGEGKRLNKGKSVFQRNGDVTVQVWKAKTCVNDKYDP*