Scaffold JGI24702J35022_10072621

Overview

Basic Information

• Taxon OID: 3300002462
• Scaffold ID: JGI24702J35022_10072621
• Source Dataset Name: Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1855
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000298	Metagenome	1341	Y
F000848	Metagenome	861	Y
F003426	Metagenome	487	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24702J35022_100726212	F000848	AGG	MFNEGRENVHNEARSGRPSLVNDDLVHKVNERVCDDRHFAISNLSLHFPHISRTLLYDIVSSHLGYQKVCA*
JGI24702J35022_100726213	F000298	N/A	MFKTMEGAANCEIWSVIHFLNARNVLPSEIHHQICQMYGDNAMCDGMVR*
JGI24702J35022_100726214	F003426	N/A	MVSVASQLIEEVTAHAQRDSLKDAQEICADGTYFPNNLHKKTSQ*