NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24695J34938_10425630

Scaffold JGI24695J34938_10425630


Overview

Basic Information
Taxon OID3300002450 Open in IMG/M
Scaffold IDJGI24695J34938_10425630 Open in IMG/M
Source Dataset NameCornitermes sp. P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191 P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)596
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000322Metagenome1302Y
F001771Metagenome637Y

Sequences

Protein IDFamilyRBSSequence
JGI24695J34938_104256301F001771N/AVMSRDQNAGRIHSVRIDNSTFERVEEFKYXXTXLTNQNSXAGRN*
JGI24695J34938_104256303F000322GAGMASIGEERRVLVGKLEGKGRLGRPRRRRVDNIRMDLQEVGCGY

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