Scaffold JGI24695J34938_10197268

Overview

Basic Information

• Taxon OID: 3300002450
• Scaffold ID: JGI24695J34938_10197268
• Source Dataset Name: Cornitermes sp. P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 838
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Cephalopoda → Coleoidea → Octopodiformes → Octopoda → Incirrata → Octopodidae → Octopus → Octopus bimaculoides (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024129	Metagenome	207	Y
F041283	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24695J34938_101972681	F024129	AGGA	LKEKRCRKVTKGVLFFHDNVPAHRALATQKKQDYLDLECTK
JGI24695J34938_101972683	F041283	N/A	MVTNHDRKSXGSCRKNSKCCSENWHC*RF*SAFRQFGTHFMEIFYMSKSS*MMDPCRSREMLCSSAIDLAEIWRPSKISL*I*SIISGVVTVLGHPGRGASQVEKSSCLNWATQFLTVAYDGACSPNVSVRMV*ISFHALPCRKKVDESSCLHVVEIARVA