Scaffold JGI24698J34947_10002380

Overview

Basic Information

• Taxon OID: 3300002449
• Scaffold ID: JGI24698J34947_10002380
• Source Dataset Name: Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10125
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090568	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24698J34947_100023802	F090568	GGAG	MYYSNELIDELIKSVTLDKAMYSNIQAHNVAKMLKEHKSWYKLFGVYWWTVKDALRKYVDNGEWYCGVQDDPLMKERAWHGSEFRTMLAAMYRLNEHLELTSACIWYDKEGESHQYTLSDPDAEC*