NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24768J34885_10001088

Scaffold JGI24768J34885_10001088


Overview

Basic Information
Taxon OID3300002447 Open in IMG/M
Scaffold IDJGI24768J34885_10001088 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8351
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F019762Metagenome / Metatranscriptome228Y
F024559Metagenome / Metatranscriptome205Y
F033308Metagenome177Y
F043407Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
JGI24768J34885_1000108812F002977AGCAGGMIVTQPPAEGIMKTNDWGDSRVYRIACNCGDENHNHNMWVEADDCDIIVTIYTTGKTNYWSKTRWYHIWTLLTKGYVDTESSVHLNRQQALNYAETLKSAIHDVEVFRNNRQNKEERAIVKKMANEQDCI*
JGI24768J34885_1000108813F033308AGGAMNTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGTVPFDLYASKGVATFTVWAESIQDAEHQVSQFLERDEDE*
JGI24768J34885_100010884F043407GGAMTTILKNVKTVNNIGPGYGAVPTISTAPLTIGQVYTTNSTAGQFLTSATNGTNWANSNDNVMIVKQDPASLEVKGRMIINGVDLEERLKTIERVLTIPERDVKLEAKHPKLKKLYDEYIAALGKYRTFEAIKGEENGTT*
JGI24768J34885_100010885F019762AGGAGMELHESVAHTRREMTIKESEGFRVRVTKHEVINPKGLFSLDIIQESLKDGKVIDSQTYNFFMTKDELQTLAHGLTL*
JGI24768J34885_100010888F024559GGAGGMMTSLIKLIFGITLILLVIVFGPLLGIWSLNTLFPVLAIPYTWQTWAAYFLIFGSLTGLRFGSKK*
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