Scaffold JGI24768J34885_10000815

Overview

Basic Information

• Taxon OID: 3300002447
• Scaffold ID: JGI24768J34885_10000815
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9385
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F019762	Metagenome / Metatranscriptome	228	Y
F067423	Metagenome / Metatranscriptome	125	Y
F093229	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24768J34885_1000081512	F001957	AGGCGG	MNSVDMATNLINRAKNLQEFVVTTDVPENFRFDGVIPFDMEIKEGEISAKVFAVDFDEAVHRFNDWLETCK*
JGI24768J34885_1000081516	F019762	AGGA	MKQLHESVRNTLVEAVIKESEGFRVRMEKHEVLSPKGLFSIDLINETIDKDGKVADTSTYNYFMTKDELQQLAFALTA*
JGI24768J34885_1000081523	F067423	N/A	VLAIPERDVILEAKHPKLKKMYDEYIQALGKYRTFEAIKGNDD*
JGI24768J34885_100008159	F093229	GAG	MKAQSPAEGVLLRKDYGDAKIYNIVCECGDCDHSHEVWVEAEDHGITVTIYTQQKTKWWQQNRWKIIWTLLTRGYVERESVLIMSKQQALNYANVLQLAVKDVEEFRKVKNVKN*