Scaffold B570J29032_109959398

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109959398
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24393
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002643	Metagenome / Metatranscriptome	540	Y
F017483	Metagenome / Metatranscriptome	240	Y
F090396	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_10995939827	F090396	N/A	MIGTTGEVFNELCRFKDKGEVLPLKVMELIPVSERLPALAKLYGNDKIAIVLSKAITKALNNFNLRVGMNSDQIAQLAYSLIESAEEDQLAIQDILLFLDGMVKYKYGKVYDRMDMPTFYEMLEVYREQRHLAYAGLKEETHSQNKAAGDTNRMSNEVDKDANRNAMIEYLKTK*
B570J29032_1099593984	F002643	N/A	MKYIQLTQLVANLNAVIGGQETKVAKKLFKLFEKVKPSYEEYQAKVEELRLDNAQVDDKDCLLLNDKGEYKFTKDGIKKLTEQIKELGEKEFEFKAIEVINANGLENFTFLEDWTTGITFIKEEEEEVL*
B570J29032_10995939847	F017483	GGCGG	LYKTAYDNRQIKEWERTRTLAYMIYRSNSAEKNPKSIKTFFPLPSDEIEVDESPKISDEQLQRTLKLYGVK*