Scaffold B570J29032_109958077

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109958077
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11470
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061599	Metagenome / Metatranscriptome	131	Y
F063465	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_10995807712	F063465	N/A	MENEIELERKLTANQLYKIYKDEGGTLNFSGWLNREKTKGVFPLNGSLNEEVQKVILKQKKEDMDKTILGFPVKTLVIVGVVIIGAIVVSKYVKKN*
B570J29032_1099580777	F061599	N/A	MSNQRVNIYAYIAASNPYFAKSLAHKYGYEFDKEQSLSSVLQQLVSYEGEPAFMEMIDNHPDKELFMEYFEKKYAKKEEKTDSVKEIAGYMNFTGQIEAAKQTAENRRLTQETSLMVLAGAVLIAFAIMSKK*