Scaffold B570J29032_109957292

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109957292
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9550
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F029363	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099572922	F024061	AGGGGG	MNTGEIKNQAVINNATEQFRSLLETHFIAIARAAEESFVEEENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEEAK*
B570J29032_1099572924	F016936	N/A	MNLELIHAELIRIREALEARPFASGAPAAKPAAPRSDEVPLPAEIIPNAGEVQVHFGKNKGVALSSLGERSVAWYAQEPEPRLGNNGKPFPPRPEDVLLRNAARTIIHQKRGTLPSAAVPTAPVANIDEGNVPF*
B570J29032_1099572926	F029363	N/A	MDNDDDNDMLWAAQDLRTLTSCKAEITISRRVTIKIGAIKEGWDYQITFGDILNRGAWRWECAQADTLEAAMDITRAQITAQGDEKARELLQLQDAAAKLGLKLVEAAP*