Scaffold B570J29032_109956817

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109956817
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8784
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F007747	Metagenome / Metatranscriptome	345	Y
F020665	Metagenome / Metatranscriptome	222	Y
F041081	Metagenome	160	N
F045601	Metagenome	152	N
F102823	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099568171	F045601	N/A	RSQQFAGNPEGGSGDVVCENFPFHIEGKRCQALKPEEWMEQSKRDCPKGKIPAVFFRRNGRKEWLVIMTADSVCELARQIAPSNVKIEYVPSNPMSTTVGAGFWVHNQDELTPYIQPKLNPNK*
B570J29032_10995681712	F020665	AGGA	MKKKDRKITLVKTLEQKAVRVMIDIDDDLYEALAKAGRQHLAKDKMACFEYALNKTLLELCEELK*
B570J29032_10995681718	F102823	AGGA	MSALYDWVIVGAGLAIGKLLVAIAVITIVTAILAVFFIIEEKTK*
B570J29032_1099568174	F002009	AGGAG	MNAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL*
B570J29032_1099568175	F041081	AGGA	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCFAKVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ*
B570J29032_1099568178	F007747	GGA	MEERKMKIGTIKFGKSRPAPKAVIVDVSYDKETEAALFKAGLDLLKKDKEAVIEYVIQKSLAYQLKK*
B570J29032_1099568179	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKEDEAKLVGLGR*