NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109956658

Scaffold B570J29032_109956658


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109956658 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8546
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006935Metagenome361Y
F012978Metagenome / Metatranscriptome275Y
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y
F017132Metagenome242Y
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
B570J29032_10995665814F017132N/AVSNVSSEYFISTNILEIMRKIETAKVGEDLYEIVKKLPIQRFTQEVTGEYAEALKKYYGVEKILKFHQTQEYLFVNKIDELEIF*
B570J29032_10995665816F006935N/AMKQQYAKQIIEWAEEAKQYLTIRKEIILDENTTDQQLGSIVRQMYNSKVQTQNETIENTKQNTK*
B570J29032_10995665819F047676N/AMVVLVTFVLTIVFSIGYLVGAKQSTKQLIDKIKKDGGYFDMEITGAVYPYEHMPSWTPPTSSVDTMGTIGSKPKTQTDYQREHAKISPCVGHELESQKEIEKRDIDFMYKWIREKSGKK*
B570J29032_1099566583F016809N/AMEVGFNFSHSKDYFEITNNFLIFDNVKMIIMSKTNQEFMKQTMTGSIGGDEDYLYEQYIAQEQMNEEYWQWKSKQSHSIFPEGMEYDDEYYKSSYLPTPEEENENFKQVKQNGHT*
B570J29032_1099566584F013085N/AMDILSEIIEVSNQLIDTLDENDFFIENPFIEQIPLRRALQIRMQQKWEQEEEIFLSDDEFLEVCQSVSNNEIANTIESLVDKGALNMSVNEDGEILYSANKDYQFDKDDDDEFQ*
B570J29032_1099566585F012978N/AMNFNKTDDELKGMSDDELFEYLDAKVTHLKQHTSPLSSYKTKKFASIGAAISKTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE*
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