NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109956657

Scaffold B570J29032_109956657


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109956657 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8545
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002868Metagenome / Metatranscriptome524Y
F007102Metagenome / Metatranscriptome357N
F008183Metagenome / Metatranscriptome337Y
F009393Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
B570J29032_1099566571F002868AGGVSEGTLNANSTLDKVLGYVDSPFKLAAILIMGLVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATVVAVFKVNPMFGTRVLYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGE
B570J29032_1099566572F007102GGAGMIDPISAFAIAQGAIKGIQAAIKMGKDVQGITGDVMKFFDAKDKVAKEAIKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSALWTQIVLERNSIVQRRRTQEILDARAAKNRKQEIDEAITMALCILVAAAIFTLVAWGIIAMKGKL*
B570J29032_1099566573F008183GGAGMAEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLDELMALANKGRGGLWFGMTIVSGVSAVVGYLLNYFKH*
B570J29032_1099566574F009393AGGAMSTNSQIAFAPLGETVVVPAASTAPTGVQALVSGRLDAQGTGQYRIINASTFTVFLGVGTTAALATANAVEPVSGNPSPAIVLVPGAVEILRFARTSYFSGLASAAATVYIVQGEGI*
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