Scaffold B570J29032_109955700

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109955700
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7527
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F009005	Metagenome / Metatranscriptome	324	Y
F010683	Metagenome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099557002	F000785	N/A	MRVTNKRIGMKFDCGKLLRWAEELLGPSKCNTIAFTWDIEEESLGWYDWDNIIWINLASCKRMISVQKTILHEWTHAQQSYRWYNHYQLKFGYNKNPYEIEARENEKLVKRAYRKRKA*
B570J29032_1099557004	F009005	AGG	MSEQEMIESAASIGMDEELLSYAKQIQRQLGTEGDEALWVDCLEMAYNELVINRLYP*
B570J29032_1099557008	F010683	N/A	MKSKVKGRTPKAKKMAIVNSFKHKRVVMESVGTETLPDMVFISAAPAWAKSIVGKRYVNMDRAKAVIEALDAEKLISKGEKSILKEMDANGIVPLDVENI*