Scaffold B570J29032_109954761

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109954761
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6828
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099547611	F103250	AGGA	MQKIEIKTTYGWSTAKIGRYTNGNIGIQLFQDGMPLIKISTNLIDTVLEPREFHFNSNDAGSLKEDVLKSGHFEDTGKTNFSGYCEYPVFRLKDHVEVVEG*
B570J29032_1099547612	F008494	AGGAG	MNKQDAITSFMKAVKTYTTSIDKTAQANISFKKAVYALEDAVNQIYRDVDVKELGSNAEQRNAKISAQTSELILAKRELEYQLEVARAEETRAKTECDQIKYIIRALEVKEEA*
B570J29032_1099547614	F001561	AGAAGG	MQTPEQKLKYLNKTIETLWHGVSDTKDGDYPKIINLYKEVLKINHKDRDAWENMIWLMWSMAVNKKDTVWLLEAEKFAKRYLSLMPNGYRSYEYLGTFYRSMIKDERLAIRYYESAIRWKDAETSTHHSLIALCLKNNDLVKAKDYCLLTLKRYPKDAYATMRLKDLDAR*
B570J29032_1099547616	F008552	N/A	MIISFEASANVDTTLFGYFSMEYDPEFFSDIKENLTEISKDQTLAFKLDTEELKLLQGKYENIKRVISISDVERNKFTDVFKRDFDTSTFKKFKHCKLHIDNDYFYFTGYYETPKNQIEFQSLNFDTGFIERLEKKYNKSMVE*