Scaffold B570J29032

Basic Information
Taxon OID	3300002408 Open in IMG/M
Scaffold ID	B570J29032_109952615 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

B570J29032_109952615 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5808
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5808

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_10995261510	F000403	N/A	MEATAMSDYVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR*
B570J29032_1099526152	F016643	N/A	MTIFNPVWRVIIGGTTYTNYALANLSITSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVSIELQDSTATFVPIFGGTVVEFDIGIATSGVVGINQSVSVTALGALARLPKVLTEGVLAKDFDGDQILSILTDLLVNSWNEVPAALQWSTYDPTIQWQDAENTGLGQIDTPGSYELANRSASTTNVYSLVSALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDVSAAQAIANSLSIQTRAGDIRNEIVIKYGNNSANEVVDSDATSIALYGKLAQIITTTIENASDAEDQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRINDLPLNMSAGTYLGFVEGWTWRAAYNTVSVTAILSPLAFSLQAMQWQDVSAAETWNSISGSLDWATALVVA*
B570J29032_1099526158	F009883	GGAG	MNELSIVIFMIIAGALWAVMSYAVGFKEGQRQGYTRGRAVSRHISQLNEKVNN*
B570J29032_1099526159	F012452	AGAAGG	MAGFLENYEGNKERTDRWIKTFPQGRLEAHIVEFNADKGFVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFCEDTTTSALMRVMALVLGGTEKATKETMEQVKVNDATKPQDYDYWTTKFGEVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCDPLWYVFTSDGTWKPQL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold B570J29032_109952615

Overview

Ecosystem & Geography

Associated Families

Sequences