Scaffold B570J29032_109924798

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109924798
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2810
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F033405	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099247984	F012016	GAG	MDKQPYAWSTEEFNVNGDLVWSSITQFRPKELSWIRDLPNKKHYITITPLYKDESKAEKITGIKSYKESTQKMMEAYNGL*
B570J29032_1099247985	F006587	GGAGG	MDSKKYDGTGFVLVGLIVGCCITWGVMKYNQTQTKYKMNLKCIQGELYEEVRTNMFIKSHLECFEQRSF*
B570J29032_1099247988	F033405	GAGG	MVANYKKKTDEELIEAVNQYMEKYPKATRNQIVLHATGNAERVRKLAKENKIKLPKALPKGSNSNWNRYFSLTSETNSLRKGTKYNV*